First, you cannot be using a Scatter chart since your x-values are not numeric but text ranges (95-99 for example). Not that that matters...
I suspect the x-axis moves to the top because all your y-values have negative log values (except 1 which becomes zero). By default, the x-axis intercepts the y-axis at y=0, which for a log scale translates to an original y-value of 1.
You can solve this problem by double-clicking the y-axis. From the 'Scale' tab in the 'Category (X) axis crosses at' field enter a very small number such as 0.00000001. Don't enter zero. For obvious reasons it won't work. Make sure the corresponding 'Auto' checkbox is *unchecked.*